PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G22985.1
Common NameCRF7, ERF069, F19G10.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 159aa    MW: 17535.8 Da    PI: 10.3309
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G22985.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.7e-2073126155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++++GVr+++ +g+W+AeIr+    g  k    r++lg+f taeeAa a+++a+ +l g
  AT1G22985.1  73 KKFRGVRQRP-WGKWAAEIRC----GrvKGrpERIWLGTFETAEEAALAYDNAAIQLIG 126
                  59********.**********....4442249**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381233.3E-361157IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000184.34E-2573133No hitNo description
PfamPF008476.3E-1474126IPR001471AP2/ERF domain
PROSITE profilePS5103221.54974134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2774134IPR001471AP2/ERF domain
SMARTSM003801.8E-3074140IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-2074134IPR016177DNA-binding domain
PRINTSPR003671.2E-117586IPR001471AP2/ERF domain
PRINTSPR003671.2E-11100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0009001anatomyfruit
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0009062anatomygynoecium
PO:0020030anatomycotyledon
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MKRIVRISFT DMEATDSSSS EDESPPSSRR RGKKLVKEIV IDHSDPPEVG KTRFKIRIPA  60
SLLAARNTTA NKKKFRGVRQ RPWGKWAAEI RCGRVKGRPE RIWLGTFETA EEAALAYDNA  120
AIQLIGPDAP TNFGRPDVDS AVVKKQDSDA SGGASEEVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1870133162ATERF1
3gcc_A5e-1870133162ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible264726_at0.0
Expression AtlasAT1G22985-
AtGenExpressAT1G22985-
ATTED-IIAT1G22985-
Functional Description ? help Back to Top
Source Description
TAIRencodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G22985.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT1G22985, AT1G71130
IntActSearch Q8W4I5
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G22985
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAF0006570.0AF000657.1 Arabidopsis thaliana BAC F19G10, complete sequence.
GenBankAY0625410.0AY062541.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
GenBankAY0933360.0AY093336.1 Arabidopsis thaliana unknown protein mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564186.11e-113ethylene-responsive transcription factor ERF069
SwissprotQ8W4I51e-115ERF69_ARATH; Ethylene-responsive transcription factor ERF069
TrEMBLV4KWU51e-73V4KWU5_EUTSA; Uncharacterized protein
STRINGAT1G22985.11e-112(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Vanderauwera S, et al.
    Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis.
    Plant Physiol., 2005. 139(2): p. 806-21
    [PMID:16183842]
  4. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  5. Sakuma Y, et al.
    Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression.
    Plant Cell, 2006. 18(5): p. 1292-309
    [PMID:16617101]
  6. Zhuang J, et al.
    Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa.
    Biochem. Biophys. Res. Commun., 2008. 371(3): p. 468-74
    [PMID:18442469]
  7. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  8. Inz
    A subcellular localization compendium of hydrogen peroxide-induced proteins.
    Plant Cell Environ., 2012. 35(2): p. 308-20
    [PMID:21443605]
  9. Cutcliffe JW,Hellmann E,Heyl A,Rashotte AM
    CRFs form protein-protein interactions with each other and with members of the cytokinin signalling pathway in Arabidopsis via the CRF domain.
    J. Exp. Bot., 2011. 62(14): p. 4995-5002
    [PMID:21705390]